Annotation of co-expression genes

PH01000162G1230's details annotation

1.Annotation

ICBR annotation: 2-aminoethanethiol dioxygenase, putative, expressed

Blast result AT5G39890 : 6.40E-50
Blast annotation: Protein of unknown function (DUF1637)

2.Location

Scaffold: PH01000162
Strand: -

RegionStartEnd
gene842749846719
mRNA842749846719
exon842749843277
exon843927844130
exon844408844570
exon844708844829
exon845285845448
exon846268846719
CDS843072843277
CDS843927844130
CDS844408844570
CDS844708844829
CDS845285845448
CDS846268846338

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000058cysteamine dioxygenase activity,
LBD Transcription_Regulator(from PlantTFDB)
oxidation-reduction process,
Taurine_and_hypotaurine_metabolism
coexpression networkCFinderM000399cysteamine dioxygenase activity,
Taurine_and_hypotaurine_metabolism
Streptomycin_biosynthesis
Butirosin_and_neomycin_biosynthesis
Galactose_metabolism
Fructose_and_mannose_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07847.11PCO_ADO79281

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Taurine and hypotaurine metabolismcysteamine dioxygenase [EC:1.13.11.19]ko00430K10712

10.Gene Ontology

GO AccessionGO Annotation
GO:0047800cysteamine dioxygenase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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