PH01000100G1500's details annotation
1.Annotation
ICBR annotation: DUF677 domain containing protein, putative
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000100
Strand: +
| Region | Start | End |
| gene | 1059194 | 1061578 |
| mRNA | 1059194 | 1061578 |
| exon | 1059194 | 1059582 |
| exon | 1060152 | 1060230 |
| exon | 1060314 | 1060603 |
| exon | 1060933 | 1060976 |
| exon | 1061223 | 1061578 |
| CDS | 1059341 | 1059582 |
| CDS | 1060152 | 1060230 |
| CDS | 1060314 | 1060603 |
| CDS | 1060933 | 1060976 |
| CDS | 1061223 | 1061488 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05055.11 | DUF677 | 221 | 289 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.