PH01000014G2320's details annotation
1.Annotation
ICBR annotation: kinesin motor domain containing protein, putative, expressed
Blast result AT3G12020 : 1.30E-85
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000014
Strand: +
| Region | Start | End |
| gene | 1634665 | 1639981 |
| mRNA | 1634665 | 1639981 |
| exon | 1634665 | 1635338 |
| exon | 1635712 | 1635936 |
| exon | 1636243 | 1636383 |
| exon | 1636472 | 1636597 |
| exon | 1636686 | 1636736 |
| exon | 1637836 | 1637883 |
| exon | 1637958 | 1638161 |
| exon | 1638777 | 1639981 |
| CDS | 1635240 | 1635338 |
| CDS | 1635712 | 1635936 |
| CDS | 1636243 | 1636383 |
| CDS | 1636472 | 1636597 |
| CDS | 1636686 | 1636736 |
| CDS | 1637836 | 1637883 |
| CDS | 1637958 | 1638161 |
| CDS | 1638777 | 1639319 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001308 | microtubule associated complex, pseudouridine synthesis, RNA modification, RNA processing, microtubule-based movement, |
| coexpression network | CFinderM001697 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis L-phenylalanine biosynthetic process, cellular carbohydrate metabolic process, peptide-methionine-(S)-S-oxide reductase activity, prephenate dehydratase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, Carbon_fixation_pathways_in_prokaryotes cofactor binding, Citrate_cycle_(TCA_cycle) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.