|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | microtubule associated complex, | 0.018055548 | GO:0005875 | | pseudouridine synthesis, | 0.01949892 | GO:0001522 | | RNA modification, | 0.01949892 | GO:0009451 | | RNA processing, | 0.035239454 | GO:0006396 | | microtubule-based movement, | 0.035690707 | GO:0007018 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000014G2300 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G06670 (6.00E-114) | | PH01000014G2320 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT3G12020 (1.30E-85) | | PH01000383G0720 | Plant VAMP (vesicle-associated membrane protein) family protein | AT4G00170 (1.50E-54) | | PH01000918G0720 | Pseudouridine synthase family protein | AT5G14460 (6.00E-132) | | PH01001599G0330 | methyltransferases | AT2G21070 (2.00E-140) | | PH01002851G0080 | DYNAMIN-like 1C | AT1G14830 (0) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000876 | GTPase activity,
GTP binding,
cellulose biosynthetic process,
ubiquitin-dependent protein catabolic process,
cellulose synthase (UDP-forming) activity,
ubiquitin thiolesterase activity,
structural molecule activity,
| details | | CFinderM001307 | pseudouridine synthesis,
RNA modification,
protein kinase C-activating G-protein coupled receptor signaling pathway,
RNA processing,
pseudouridine synthase activity,
NAD+ kinase activity,
diacylglycerol kinase activity,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM001497 | COPII vesicle coat,
ER to Golgi vesicle-mediated transport,
Protein_processing_in_endoplasmic_reticulum
signal transducer activity,
ubiquitin thiolesterase activity,
structural molecule activity,
protein binding,
transferase activity, transferring glycosyl groups,
| details | | CFinderM001626 | Golgi apparatus,
membrane coat,
clathrin adaptor complex,
Amino_sugar_and_nucleotide_sugar_metabolism
Starch_and_sucrose_metabolism
| details | | CFinderM001697 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
L-phenylalanine biosynthetic process,
cellular carbohydrate metabolic process,
peptide-methionine-(S)-S-oxide reductase activity,
prephenate dehydratase activity,
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer,
Carbon_fixation_pathways_in_prokaryotes
cofactor binding,
Citrate_cycle_(TCA_cycle)
| details |
4.Expression profilings |
