CFinderM001497's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
COPII vesicle coat,0.002810039GO:0030127
ER to Golgi vesicle-mediated transport,0.035883621GO:0006888
Protein_processing_in_endoplasmic_reticulum0.040378107KEGG
signal transducer activity,0.043331942GO:0004871
ubiquitin thiolesterase activity,0.043331942GO:0004221
structural molecule activity,0.043331942GO:0005198
protein binding,0.04753683GO:0005515
transferase activity, transferring glycosyl groups,0.04753683GO:0016757

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000383G0720Plant VAMP (vesicle-associated membrane protein) family proteinAT4G00170 (1.50E-54)
PH01000580G0660galacturonosyltransferase 14AT5G15470 (0)
PH01000855G0460ubiquitin-specific protease 8AT5G22030 (0.00E+00)
PH01001619G0110F-box family proteinAT1G70590 (6.20E-49)
PH01002213G0250Galactose oxidase/kelch repeat superfamily proteinAT5G57360 (0.00E+00)
PH01003269G0110Sec23/Sec24 protein transport family proteinAT3G23660 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000520ER_membrane_protein_complex
GT96 GlycosylTransferases
TKL-Pl-4 (from iTAK)
details
CFinderM000875membrane,
cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
acetylglucosaminyltransferase activity,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
details
CFinderM000876GTPase activity,
GTP binding,
cellulose biosynthetic process,
ubiquitin-dependent protein catabolic process,
cellulose synthase (UDP-forming) activity,
ubiquitin thiolesterase activity,
structural molecule activity,
details
CFinderM001307pseudouridine synthesis,
RNA modification,
protein kinase C-activating G-protein coupled receptor signaling pathway,
RNA processing,
pseudouridine synthase activity,
NAD+ kinase activity,
diacylglycerol kinase activity,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
details
CFinderM001308microtubule associated complex,
pseudouridine synthesis,
RNA modification,
RNA processing,
microtubule-based movement,
details
CFinderM001495integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
details
CFinderM001496Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
details
CFinderM001626Golgi apparatus,
membrane coat,
clathrin adaptor complex,
Amino_sugar_and_nucleotide_sugar_metabolism
Starch_and_sucrose_metabolism
details

4.Expression profilings