|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Golgi apparatus, | 0.009988646 | GO:0005794 | | membrane coat, | 0.028221673 | GO:0030117 | | clathrin adaptor complex, | 0.028221673 | GO:0030131 | | Amino_sugar_and_nucleotide_sugar_metabolism | 0.047587911 | KEGG | | Starch_and_sucrose_metabolism | 0.047587911 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000036G0740 | Adaptor protein complex AP-1, gamma subunit | AT1G60070 (0.00E+00) | | PH01000276G0160 | galacturonosyltransferase 1 | AT3G61130 (0.00E+00) | | PH01000383G0720 | Plant VAMP (vesicle-associated membrane protein) family protein | AT4G00170 (1.50E-54) | | PH01000441G0190 | cellulose synthase 1 | AT4G32410 (0.00E+00) | | PH01000855G0460 | ubiquitin-specific protease 8 | AT5G22030 (0.00E+00) | | PH01004743G0110 | DYNAMIN-like 1C | AT1G14830 (0.00E+00) | | PH01005323G0030 | LAG1 longevity assurance homolog 3 | AT1G13580 (9.00E-125) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000172 | metabolic process,
cellulose biosynthetic process,
| details | | CFinderM000875 | membrane,
cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
acetylglucosaminyltransferase activity,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM000876 | GTPase activity,
GTP binding,
cellulose biosynthetic process,
ubiquitin-dependent protein catabolic process,
cellulose synthase (UDP-forming) activity,
ubiquitin thiolesterase activity,
structural molecule activity,
| details | | CFinderM000892 | Valine,_leucine_and_isoleucine_degradation
cellular aldehyde metabolic process,
aldehyde dehydrogenase [NAD(P)+] activity,
| details | | CFinderM001307 | pseudouridine synthesis,
RNA modification,
protein kinase C-activating G-protein coupled receptor signaling pathway,
RNA processing,
pseudouridine synthase activity,
NAD+ kinase activity,
diacylglycerol kinase activity,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM001308 | microtubule associated complex,
pseudouridine synthesis,
RNA modification,
RNA processing,
microtubule-based movement,
| details | | CFinderM001497 | COPII vesicle coat,
ER to Golgi vesicle-mediated transport,
Protein_processing_in_endoplasmic_reticulum
signal transducer activity,
ubiquitin thiolesterase activity,
structural molecule activity,
protein binding,
transferase activity, transferring glycosyl groups,
| details | | CFinderM001747 | NAK (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
Golgi apparatus,
cysteine metabolic process,
membrane coat,
clathrin adaptor complex,
cysteine desulfurase activity,
regulation of ARF protein signal transduction,
cytoskeleton organization,
ARF guanyl-nucleotide exchange factor activity,
| details | | CFinderM001894 | AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,
| details |
4.Expression profilings |
