PH01000855G0460's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT5G22030 : 0.00E+00
Blast annotation: ubiquitin-specific protease 8
2.Location
Scaffold: PH01000855
Strand: +
| Region | Start | End |
| gene | 369142 | 377713 |
| mRNA | 369142 | 377713 |
| exon | 369142 | 370118 |
| exon | 370196 | 370417 |
| exon | 373152 | 373278 |
| exon | 373344 | 373403 |
| exon | 373751 | 374047 |
| exon | 374127 | 374438 |
| exon | 374897 | 375154 |
| exon | 375297 | 375412 |
| exon | 375529 | 376188 |
| exon | 376431 | 376704 |
| exon | 376869 | 377713 |
| CDS | 370009 | 370118 |
| CDS | 370196 | 370417 |
| CDS | 373152 | 373278 |
| CDS | 373344 | 373403 |
| CDS | 373751 | 374047 |
| CDS | 374127 | 374438 |
| CDS | 374897 | 375154 |
| CDS | 375297 | 375412 |
| CDS | 375529 | 376188 |
| CDS | 376431 | 376704 |
| CDS | 376869 | 376979 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000875 | membrane, cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, acetylglucosaminyltransferase activity, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000876 | GTPase activity, GTP binding, cellulose biosynthetic process, ubiquitin-dependent protein catabolic process, cellulose synthase (UDP-forming) activity, ubiquitin thiolesterase activity, structural molecule activity, |
| coexpression network | CFinderM001497 | COPII vesicle coat, ER to Golgi vesicle-mediated transport, Protein_processing_in_endoplasmic_reticulum signal transducer activity, ubiquitin thiolesterase activity, structural molecule activity, protein binding, transferase activity, transferring glycosyl groups, |
| coexpression network | CFinderM001626 | Golgi apparatus, membrane coat, clathrin adaptor complex, Amino_sugar_and_nucleotide_sugar_metabolism Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 227 | 845 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.