PH01000383G0720's details annotation
1.Annotation
ICBR annotation: MSP domain containing protein, expressed
Blast result AT4G00170 : 1.50E-54
Blast annotation: Plant VAMP (vesicle-associated membrane protein) family protein
2.Location
Scaffold: PH01000383
Strand: -
| Region | Start | End |
| gene | 598188 | 603203 |
| mRNA | 598188 | 603203 |
| exon | 598188 | 598318 |
| exon | 599136 | 599213 |
| exon | 600297 | 600341 |
| exon | 600458 | 600619 |
| exon | 600728 | 600843 |
| exon | 600927 | 601008 |
| exon | 601117 | 601187 |
| exon | 601899 | 603203 |
| CDS | 598208 | 598318 |
| CDS | 599136 | 599213 |
| CDS | 600297 | 600341 |
| CDS | 600458 | 600619 |
| CDS | 600728 | 600843 |
| CDS | 600927 | 601008 |
| CDS | 601117 | 601187 |
| CDS | 601899 | 601956 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000876 | GTPase activity, GTP binding, cellulose biosynthetic process, ubiquitin-dependent protein catabolic process, cellulose synthase (UDP-forming) activity, ubiquitin thiolesterase activity, structural molecule activity, |
| coexpression network | CFinderM001307 | pseudouridine synthesis, RNA modification, protein kinase C-activating G-protein coupled receptor signaling pathway, RNA processing, pseudouridine synthase activity, NAD+ kinase activity, diacylglycerol kinase activity, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism |
| coexpression network | CFinderM001308 | microtubule associated complex, pseudouridine synthesis, RNA modification, RNA processing, microtubule-based movement, |
| coexpression network | CFinderM001497 | COPII vesicle coat, ER to Golgi vesicle-mediated transport, Protein_processing_in_endoplasmic_reticulum signal transducer activity, ubiquitin thiolesterase activity, structural molecule activity, protein binding, transferase activity, transferring glycosyl groups, |
| coexpression network | CFinderM001626 | Golgi apparatus, membrane coat, clathrin adaptor complex, Amino_sugar_and_nucleotide_sugar_metabolism Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00635.25 | Motile_Sperm | 9 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.