Annotation of co-expression genes

PH01000441G0190's details annotation

1.Annotation

ICBR annotation: CESA1 - cellulose synthase, expressed

Blast result AT4G32410 : 0.00E+00
Blast annotation: cellulose synthase 1

2.Location

Scaffold: PH01000441
Strand: +

RegionStartEnd
gene141959150646
mRNA141959150646
exon141959143237
exon143829144024
exon144211144401
exon144758144842
exon144922145111
exon145544145726
exon145914146250
exon146335146472
exon146565146690
exon146780146992
exon147071147326
exon147523147719
exon147873148223
exon148335148340
exon148490148534
exon149283150646
CDS143160143237
CDS143829144024
CDS144211144401
CDS144758144842
CDS144922145111
CDS145544145726
CDS145914146250
CDS146335146472
CDS146565146690
CDS146780146992
CDS147071147326
CDS147523147719
CDS147873148223
CDS148335148340
CDS148490148534
CDS149283149870

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
coexpression networkCFinderM000172metabolic process,
cellulose biosynthetic process,
coexpression networkCFinderM000875membrane,
cellulose biosynthetic process,
cellulose synthase (UDP-forming) activity,
acetylglucosaminyltransferase activity,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
coexpression networkCFinderM000876GTPase activity,
GTP binding,
cellulose biosynthetic process,
ubiquitin-dependent protein catabolic process,
cellulose synthase (UDP-forming) activity,
ubiquitin thiolesterase activity,
structural molecule activity,
coexpression networkCFinderM000892Valine,_leucine_and_isoleucine_degradation
cellular aldehyde metabolic process,
aldehyde dehydrogenase [NAD(P)+] activity,
coexpression networkCFinderM001626Golgi apparatus,
membrane coat,
clathrin adaptor complex,
Amino_sugar_and_nucleotide_sugar_metabolism
Starch_and_sucrose_metabolism
coexpression networkCFinderM001747NAK (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
Golgi apparatus,
cysteine metabolic process,
membrane coat,
clathrin adaptor complex,
cysteine desulfurase activity,
regulation of ARF protein signal transduction,
cytoskeleton organization,
ARF guanyl-nucleotide exchange factor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14569.5zf-UDP28105
PF03552.13Cellulose_synt3181048

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016020membrane
GO:0016760cellulose synthase (UDP-forming) activity
GO:0030244cellulose biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.