PH01000036G0740's details annotation
1.Annotation
ICBR annotation: AP-1 complex subunit gamma-1, putative, expressed
Blast result AT1G60070 : 0.00E+00
Blast annotation: Adaptor protein complex AP-1, gamma subunit
2.Location
Scaffold: PH01000036
Strand: +
| Region | Start | End |
| gene | 447065 | 457208 |
| mRNA | 447065 | 457208 |
| exon | 447065 | 447851 |
| exon | 447954 | 448095 |
| exon | 448505 | 448678 |
| exon | 449292 | 449471 |
| exon | 449946 | 450100 |
| exon | 450347 | 450437 |
| exon | 451205 | 451458 |
| exon | 451534 | 451588 |
| exon | 453084 | 453206 |
| exon | 453297 | 453392 |
| exon | 453811 | 453938 |
| exon | 454526 | 454630 |
| exon | 454711 | 454997 |
| exon | 455479 | 455586 |
| exon | 455664 | 455762 |
| exon | 456005 | 456180 |
| exon | 456669 | 456773 |
| exon | 457067 | 457208 |
| CDS | 447553 | 447851 |
| CDS | 447954 | 448095 |
| CDS | 448505 | 448678 |
| CDS | 449292 | 449471 |
| CDS | 449946 | 450100 |
| CDS | 450347 | 450437 |
| CDS | 451205 | 451458 |
| CDS | 451534 | 451588 |
| CDS | 453084 | 453206 |
| CDS | 453297 | 453392 |
| CDS | 453811 | 453938 |
| CDS | 454526 | 454630 |
| CDS | 454711 | 454997 |
| CDS | 455479 | 455586 |
| CDS | 455664 | 455762 |
| CDS | 456005 | 456180 |
| CDS | 456669 | 456773 |
| CDS | 457067 | 457072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001626 | Golgi apparatus, membrane coat, clathrin adaptor complex, Amino_sugar_and_nucleotide_sugar_metabolism Starch_and_sucrose_metabolism |
| coexpression network | CFinderM001747 | NAK (from iTAK) Sulfur_relay_system Thiamine_metabolism Golgi apparatus, cysteine metabolic process, membrane coat, clathrin adaptor complex, cysteine desulfurase activity, regulation of ARF protein signal transduction, cytoskeleton organization, ARF guanyl-nucleotide exchange factor activity, |
| coexpression network | CFinderM001894 | AGC_NDR (from iTAK) Golgi apparatus, membrane coat, clathrin adaptor complex, nucleic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01602.19 | Adaptin_N | 15 | 354 |
| PF01602.19 | Adaptin_N | 367 | 597 |
| PF02883.19 | Alpha_adaptinC2 | 773 | 856 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0005794 | Golgi apparatus |
| GO:0006886 | intracellular protein transport |
| GO:0008565 | protein transporter activity |
| GO:0015031 | protein transport |
| GO:0016192 | vesicle-mediated transport |
| GO:0030117 | membrane coat |
| GO:0030131 | clathrin adaptor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.