Annotation of co-expression genes

PH01004743G0110's details annotation

1.Annotation

ICBR annotation: dynamin family protein, putative, expressed

Blast result AT1G14830 : 0.00E+00
Blast annotation: DYNAMIN-like 1C

2.Location

Scaffold: PH01004743
Strand: -

RegionStartEnd
gene6992681865
mRNA6992681865
exon6992670420
exon7057970718
exon7125571483
exon7160771657
exon7216972394
exon7256972639
exon7284972968
exon7306073254
exon7333473398
exon7355073640
exon7397374034
exon7412574175
exon7438874489
exon7785678100
exon7874078834
exon7890479191
exon8161481865
CDS7029570420
CDS7057970718
CDS7125571483
CDS7160771657
CDS7216972394
CDS7256972639
CDS7284972968
CDS7306073254
CDS7333473398
CDS7355073640
CDS7397374034
CDS7412574175
CDS7438874489
CDS7785678100
CDS7874078834
CDS7890479191
CDS8161481748

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000876GTPase activity,
GTP binding,
cellulose biosynthetic process,
ubiquitin-dependent protein catabolic process,
cellulose synthase (UDP-forming) activity,
ubiquitin thiolesterase activity,
structural molecule activity,
coexpression networkCFinderM001626Golgi apparatus,
membrane coat,
clathrin adaptor complex,
Amino_sugar_and_nucleotide_sugar_metabolism
Starch_and_sucrose_metabolism
coexpression networkCFinderM001894AGC_NDR (from iTAK)
Golgi apparatus,
membrane coat,
clathrin adaptor complex,
nucleic acid binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00350.22Dynamin_N255366
PF01031.19Dynamin_M376642
PF02212.17GED668760

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005525GTP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.