CFinderM001495's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
integral to Golgi membrane,0.001124648GO:0030173
intra-Golgi vesicle-mediated transport,0.010696103GO:0006891
cysteine metabolic process,0.010696103GO:0006534
STE_STE11 (from iTAK)0.013048967GFam
Sulfur_relay_system0.013379048KEGG
Thiamine_metabolism0.013379048KEGG
cysteine desulfurase activity,0.028634353GO:0031071

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000000G5980Protein kinase superfamily proteinAT1G63700 (2.00E-150)
PH01000056G0580transducin family protein / WD-40 repeat family proteinAT3G63460 (0.00E+00)
PH01000059G0560NAD(P)-binding Rossmann-fold superfamily proteinAT5G52810 (1.20E-48)
PH01000142G0270CCAAT-displacement protein alternatively spliced productAT3G18480 (0.00E+00)
PH01000511G0080Thioredoxin superfamily proteinAT1G20225 (5.80E-51)
PH01000537G0940-- (-)
PH01000837G0420-AT5G40740 (9.00E-120)
PH01001330G0530XH/XS domain-containing proteinAT1G15910 (6.00E-141)
PH01002186G0150RING/U-box superfamily proteinAT5G62910 (3.50E-29)
PH01002213G0250Galactose oxidase/kelch repeat superfamily proteinAT5G57360 (0.00E+00)
PH01003232G0060-AT5G08440 (2.00E-117)
PH01004034G0080nitrogen fixation S (NIFS)-like 1AT5G65720 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000139metabolic process,
transferase activity, transferring hexosyl groups,
cysteine metabolic process,
phenylalanyl-tRNA aminoacylation,
cysteine desulfurase activity,
phenylalanine-tRNA ligase activity,
details
CFinderM000206mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Others Transcription_Regulator(from iTAK)
two-component response regulator activity,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM000365microtubule-based movement,
microtubule associated complex,
microtubule motor activity,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
details
CFinderM000461STE_STE11 (from iTAK)
zinc_ion_transmembrane_transport
cellular component organization,
actin cytoskeleton organization,
details
CFinderM000506RLK-Pelle_RLCK-VIIa-2 (from iTAK)
Protein_processing_in_endoplasmic_reticulum
details
CFinderM000520ER_membrane_protein_complex
GT96 GlycosylTransferases
TKL-Pl-4 (from iTAK)
details
CFinderM001150CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
nucleosome,
details
CFinderM001270lipid metabolic process,
details
CFinderM001496Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
details
CFinderM001497COPII vesicle coat,
ER to Golgi vesicle-mediated transport,
Protein_processing_in_endoplasmic_reticulum
signal transducer activity,
ubiquitin thiolesterase activity,
structural molecule activity,
protein binding,
transferase activity, transferring glycosyl groups,
details
CFinderM001540DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
details
CFinderM001663DNA polymerase III complex,
GRAS Transcription_Regulator(from PlantTFDB)
DNA_replication
DNA-directed DNA polymerase activity,
details
CFinderM001672STE_STE11 (from iTAK)
details
CFinderM001673HAUS_complex
RLK-Pelle_LRR-V (from iTAK)
STE_STE11 (from iTAK)
spindle_assembly
zinc_ion_transmembrane_transport
details
CFinderM001715vacuolar proton-transporting V-type ATPase, V1 domain,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
STE_STE11 (from iTAK)
ATP hydrolysis coupled proton transport,
details
CFinderM001747NAK (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
Golgi apparatus,
cysteine metabolic process,
membrane coat,
clathrin adaptor complex,
cysteine desulfurase activity,
regulation of ARF protein signal transduction,
cytoskeleton organization,
ARF guanyl-nucleotide exchange factor activity,
details
CFinderM001793cysteine desulfurase activity,
cysteine metabolic process,
6-phosphofructokinase complex,
fructose_6-phosphate_metabolic_process
Sulfur_relay_system
Thiamine_metabolism
6-phosphofructokinase activity,
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides,
Galactose_metabolism
Fructose_and_mannose_metabolism
Pentose_phosphate_pathway
details
CFinderM001863Golgi apparatus,
clathrin adaptor complex,
membrane coat,
binding,
Protein_processing_in_endoplasmic_reticulum
protein transporter activity,
details
CFinderM001881cysteine metabolic process,
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
microtubule associated complex,
microtubule-based movement,
details
CFinderM001887microtubule organizing center,
spindle pole,
nuclear pore,
microtubule cytoskeleton organization,
C2H2 Transcription_Regulator(from PlantTFDB)
RNA_transport
details

4.Expression profilings


Show details about module gene expression profiling