PH01003232G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G08440 : 2.00E-117
Blast annotation: -
2.Location
Scaffold: PH01003232
Strand: +
| Region | Start | End |
| gene | 38813 | 48170 |
| mRNA | 38813 | 48170 |
| exon | 38813 | 39470 |
| exon | 39546 | 39608 |
| exon | 40240 | 40595 |
| exon | 40655 | 40772 |
| exon | 40849 | 40983 |
| exon | 41157 | 41261 |
| exon | 41667 | 41777 |
| exon | 42203 | 42244 |
| exon | 42412 | 42528 |
| exon | 42606 | 42793 |
| exon | 43301 | 43584 |
| exon | 43667 | 43788 |
| exon | 43910 | 43952 |
| exon | 44072 | 44163 |
| exon | 44594 | 44642 |
| exon | 44909 | 44979 |
| exon | 46401 | 46489 |
| exon | 46868 | 46913 |
| exon | 48073 | 48170 |
| CDS | 39348 | 39470 |
| CDS | 39546 | 39608 |
| CDS | 40240 | 40595 |
| CDS | 40655 | 40772 |
| CDS | 40849 | 40983 |
| CDS | 41157 | 41261 |
| CDS | 41667 | 41777 |
| CDS | 42203 | 42244 |
| CDS | 42412 | 42528 |
| CDS | 42606 | 42793 |
| CDS | 43301 | 43584 |
| CDS | 43667 | 43788 |
| CDS | 43910 | 43952 |
| CDS | 44072 | 44163 |
| CDS | 44594 | 44642 |
| CDS | 44909 | 44979 |
| CDS | 46401 | 46489 |
| CDS | 46868 | 46913 |
| CDS | 48073 | 48120 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000139 | metabolic process, transferase activity, transferring hexosyl groups, cysteine metabolic process, phenylalanyl-tRNA aminoacylation, cysteine desulfurase activity, phenylalanine-tRNA ligase activity, |
| coexpression network | CFinderM001495 | integral to Golgi membrane, intra-Golgi vesicle-mediated transport, cysteine metabolic process, STE_STE11 (from iTAK) Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, |
| coexpression network | CFinderM001663 | DNA polymerase III complex, GRAS Transcription_Regulator(from PlantTFDB) DNA_replication DNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001881 | cysteine metabolic process, Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, microtubule associated complex, microtubule-based movement, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.