|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | DNA polymerase III complex, | 0.006745676 | GO:0009360 | | GRAS Transcription_Regulator(from PlantTFDB) | 0.01680106 | GFam | | DNA_replication | 0.048620417 | KEGG | | DNA-directed DNA polymerase activity, | 0.049889941 | GO:0003887 |
2.Module member annotation
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000016 | protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,
| details | | CFinderM000109 | Glyoxylate_and_dicarboxylate_metabolism
Peroxisome
FMN binding,
Alanine,_aspartate_and_glutamate_metabolism
Glycine,_serine_and_threonine_metabolism
catalytic activity,
| details | | CFinderM000139 | metabolic process,
transferase activity, transferring hexosyl groups,
cysteine metabolic process,
phenylalanyl-tRNA aminoacylation,
cysteine desulfurase activity,
phenylalanine-tRNA ligase activity,
| details | | CFinderM000189 | phosphate ion transport,
cellular carbohydrate metabolic process,
malate metabolic process,
L-malate dehydrogenase activity,
inorganic phosphate transmembrane transporter activity,
malate dehydrogenase activity,
Carbon_fixation_in_photosynthetic_organisms
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glyoxylate_and_dicarboxylate_metabolism
| details | | CFinderM000235 | proton-transporting ATP synthase complex, coupling factor F(o),
intracellular,
Photosynthesis
Oxidative_phosphorylation
ATP synthesis coupled proton transport,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM000461 | STE_STE11 (from iTAK)
zinc_ion_transmembrane_transport
cellular component organization,
actin cytoskeleton organization,
| details | | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB)
sequence-specific DNA binding,
sequence-specific DNA binding transcription factor activity,
| details | | CFinderM000659 | ATP-dependent peptidase activity,
| details | | CFinderM001423 | Glycine,_serine_and_threonine_metabolism
intracellular,
Arachidonic_acid_metabolism
glutathione peroxidase activity,
| details | | CFinderM001495 | integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
| details | | CFinderM001540 | DNA polymerase III complex,
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Terpenoid_backbone_biosynthesis
3-hydroxyacyl-CoA_dehydrogenase_activity
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity,
peptide-methionine-(S)-S-oxide reductase activity,
fatty acid metabolic process,
terpenoid biosynthetic process,
iron-sulfur cluster assembly,
| details | | CFinderM001545 | regulation of Rab GTPase activity,
PLATZ Transcription_Regulator(from iTAK)
| details | | CFinderM001642 | cis-Golgi network,
peptide-methionine_(R)-S-oxide_reductase_activity
| details | | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
STE_STE11 (from iTAK)
ATP hydrolysis coupled proton transport,
| details | | CFinderM001881 | cysteine metabolic process,
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
microtubule associated complex,
microtubule-based movement,
| details | | CFinderM001887 | microtubule organizing center,
spindle pole,
nuclear pore,
microtubule cytoskeleton organization,
C2H2 Transcription_Regulator(from PlantTFDB)
RNA_transport
| details |
4.Expression profilings |
