PH01003899G0020's details annotation
1.Annotation
ICBR annotation: AAA-type ATPase family protein, putative, expressed
Blast result AT2G02480 : 0.00E+00
Blast annotation: AAA-type ATPase family protein
2.Location
Scaffold: PH01003899
Strand: +
| Region | Start | End |
| gene | 7431 | 16153 |
| mRNA | 7431 | 16153 |
| exon | 7431 | 9509 |
| exon | 10268 | 10487 |
| exon | 11664 | 12227 |
| exon | 14227 | 14971 |
| exon | 15135 | 15210 |
| exon | 15609 | 16153 |
| CDS | 7575 | 9509 |
| CDS | 10268 | 10487 |
| CDS | 11664 | 12227 |
| CDS | 14227 | 14971 |
| CDS | 15135 | 15210 |
| CDS | 15609 | 15668 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001540 | DNA polymerase III complex, alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Terpenoid_backbone_biosynthesis 3-hydroxyacyl-CoA_dehydrogenase_activity 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, peptide-methionine-(S)-S-oxide reductase activity, fatty acid metabolic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001663 | DNA polymerase III complex, GRAS Transcription_Regulator(from PlantTFDB) DNA_replication DNA-directed DNA polymerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13177.5 | DNA_pol3_delta2 | 426 | 584 |
| PF12169.7 | DNA_pol3_gamma3 | 641 | 698 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0005524 | ATP binding |
| GO:0006260 | DNA replication |
| GO:0009360 | DNA polymerase III complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.