PH01000145G1150's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G21520 : 0.00E+00
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein
2.Location
Scaffold: PH01000145
Strand: -
| Region | Start | End |
| gene | 800825 | 806850 |
| mRNA | 800825 | 806850 |
| exon | 800825 | 801250 |
| exon | 801304 | 801378 |
| exon | 801555 | 801952 |
| exon | 802040 | 802166 |
| exon | 802917 | 803033 |
| exon | 803118 | 803216 |
| exon | 803315 | 803414 |
| exon | 803505 | 803554 |
| exon | 803635 | 803736 |
| exon | 803849 | 803926 |
| exon | 804017 | 804283 |
| exon | 804366 | 804465 |
| exon | 804578 | 804878 |
| exon | 806074 | 806850 |
| CDS | 801149 | 801250 |
| CDS | 801304 | 801378 |
| CDS | 801555 | 801952 |
| CDS | 802040 | 802166 |
| CDS | 802917 | 803033 |
| CDS | 803118 | 803216 |
| CDS | 803315 | 803414 |
| CDS | 803505 | 803554 |
| CDS | 803635 | 803736 |
| CDS | 803849 | 803926 |
| CDS | 804017 | 804283 |
| CDS | 804366 | 804465 |
| CDS | 804578 | 804878 |
| CDS | 806074 | 806107 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000109 | Glyoxylate_and_dicarboxylate_metabolism Peroxisome FMN binding, Alanine,_aspartate_and_glutamate_metabolism Glycine,_serine_and_threonine_metabolism catalytic activity, |
| coexpression network | CFinderM000189 | phosphate ion transport, cellular carbohydrate metabolic process, malate metabolic process, L-malate dehydrogenase activity, inorganic phosphate transmembrane transporter activity, malate dehydrogenase activity, Carbon_fixation_in_photosynthetic_organisms Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glyoxylate_and_dicarboxylate_metabolism |
| coexpression network | CFinderM000235 | proton-transporting ATP synthase complex, coupling factor F(o), intracellular, Photosynthesis Oxidative_phosphorylation ATP synthesis coupled proton transport, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM000500 | WRKY Transcription_Regulator(from PlantTFDB) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, |
| coexpression network | CFinderM000659 | ATP-dependent peptidase activity, |
| coexpression network | CFinderM001423 | Glycine,_serine_and_threonine_metabolism intracellular, Arachidonic_acid_metabolism glutathione peroxidase activity, |
| coexpression network | CFinderM001540 | DNA polymerase III complex, alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Terpenoid_backbone_biosynthesis 3-hydroxyacyl-CoA_dehydrogenase_activity 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, peptide-methionine-(S)-S-oxide reductase activity, fatty acid metabolic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001642 | cis-Golgi network, peptide-methionine_(R)-S-oxide_reductase_activity |
| coexpression network | CFinderM001663 | DNA polymerase III complex, GRAS Transcription_Regulator(from PlantTFDB) DNA_replication DNA-directed DNA polymerase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03765.14 | CRAL_TRIO_N | 103 | 130 |
| PF00650.19 | CRAL_TRIO | 155 | 320 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.