PH01000837G0420's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G40740 : 9.00E-120
Blast annotation: -
2.Location
Scaffold: PH01000837
Strand: -
| Region | Start | End |
| gene | 335938 | 349638 |
| mRNA | 335938 | 349638 |
| exon | 335938 | 336741 |
| exon | 337131 | 337522 |
| exon | 337654 | 337897 |
| exon | 338591 | 338746 |
| exon | 338921 | 339046 |
| exon | 340641 | 340908 |
| exon | 341001 | 341061 |
| exon | 341818 | 341977 |
| exon | 342068 | 342193 |
| exon | 345783 | 345877 |
| exon | 345969 | 346025 |
| exon | 347364 | 347613 |
| exon | 347698 | 347823 |
| exon | 348474 | 349638 |
| CDS | 336541 | 336741 |
| CDS | 337131 | 337522 |
| CDS | 337654 | 337897 |
| CDS | 338591 | 338746 |
| CDS | 338921 | 339046 |
| CDS | 340641 | 340908 |
| CDS | 341001 | 341061 |
| CDS | 341818 | 341977 |
| CDS | 342068 | 342193 |
| CDS | 345783 | 345877 |
| CDS | 345969 | 346025 |
| CDS | 347364 | 347613 |
| CDS | 347698 | 347823 |
| CDS | 348474 | 348629 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000365 | microtubule-based movement, microtubule associated complex, microtubule motor activity, regulation of Rab GTPase activity, Rab GTPase activator activity, |
| coexpression network | CFinderM000461 | STE_STE11 (from iTAK) zinc_ion_transmembrane_transport cellular component organization, actin cytoskeleton organization, |
| coexpression network | CFinderM001495 | integral to Golgi membrane, intra-Golgi vesicle-mediated transport, cysteine metabolic process, STE_STE11 (from iTAK) Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, |
| coexpression network | CFinderM001673 | HAUS_complex RLK-Pelle_LRR-V (from iTAK) STE_STE11 (from iTAK) spindle_assembly zinc_ion_transmembrane_transport |
| coexpression network | CFinderM001715 | vacuolar proton-transporting V-type ATPase, V1 domain, RLK-Pelle_RLCK-VIIa-2 (from iTAK) STE_STE11 (from iTAK) ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001881 | cysteine metabolic process, Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, microtubule associated complex, microtubule-based movement, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14661.5 | HAUS6_N | 214 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.