|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Golgi apparatus, | 0.004124935 | GO:0005794 | | clathrin adaptor complex, | 0.011659951 | GO:0030131 | | membrane coat, | 0.011659951 | GO:0030117 | | binding, | 0.03741627 | GO:0005488 | | Protein_processing_in_endoplasmic_reticulum | 0.040378107 | KEGG | | protein transporter activity, | 0.044819143 | GO:0008565 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000017G1500 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT3G53170 (1.00E-125) | | PH01000056G0580 | transducin family protein / WD-40 repeat family protein | AT3G63460 (0.00E+00) | | PH01000112G0960 | Protein kinase family protein with ARM repeat domain | AT2G40730 (2.10E-81) | | PH01000511G0080 | Thioredoxin superfamily protein | AT1G20225 (5.80E-51) | | PH01000740G0600 | Adaptor protein complex AP-1, gamma subunit | AT1G60070 (0.00E+00) | | PH01000750G0190 | Vps51/Vps67 family (components of vesicular transport) protein | AT4G02030 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000206 | mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Others Transcription_Regulator(from iTAK)
two-component response regulator activity,
Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM000418 | tRNA aminoacylation for protein translation,
| details | | CFinderM000506 | RLK-Pelle_RLCK-VIIa-2 (from iTAK)
Protein_processing_in_endoplasmic_reticulum
| details | | CFinderM000716 | Golgi apparatus,
clathrin adaptor complex,
membrane coat,
chromatin binding,
| details | | CFinderM001099 | HSF Transcription_Regulator(from PlantTFDB)
cellular process,
| details | | CFinderM001150 | CBM22 Carbohydrate-Binding_Modules
GH10 Glycoside_Hydrolases
nucleosome,
| details | | CFinderM001264 | cis-Golgi network,
Rab GDP-dissociation inhibitor activity,
C2H2 Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
| details | | CFinderM001309 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
Sulfur_metabolism
serine O-acetyltransferase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
Cysteine_and_methionine_metabolism
| details | | CFinderM001347 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM001376 | cis-Golgi network,
cell communication,
phosphatidylinositol binding,
| details | | CFinderM001398 | cis-Golgi network,
vesicle docking involved in exocytosis,
exocyst,
| details | | CFinderM001495 | integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
| details | | CFinderM001496 | Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
| details | | CFinderM001672 | STE_STE11 (from iTAK)
| details |
4.Expression profilings |
