Annotation of co-expression genes

PH01000750G0190's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT4G02030 : 0.00E+00
Blast annotation: Vps51/Vps67 family (components of vesicular transport) protein

2.Location

Scaffold: PH01000750
Strand: -

RegionStartEnd
gene121260134452
mRNA121260134452
exon121260122142
exon122391122567
exon124088124315
exon124729124800
exon125504125620
exon125728125994
exon127729127802
exon128369128436
exon128576128643
exon128751128841
exon129740129840
exon130084130158
exon130249130326
exon130551130628
exon130719130817
exon132012132119
exon132201132255
exon132382132521
exon134041134452
CDS122023122142
CDS122391122567
CDS124088124315
CDS124729124800
CDS125504125620
CDS125728125994
CDS127729127802
CDS128369128436
CDS128576128643
CDS128751128841
CDS129740129840
CDS130084130158
CDS130249130326
CDS130551130628
CDS130719130817
CDS132012132119
CDS132201132255
CDS132382132521
CDS134041134259

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000206mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Others Transcription_Regulator(from iTAK)
two-component response regulator activity,
Protein_processing_in_endoplasmic_reticulum
coexpression networkCFinderM000418tRNA aminoacylation for protein translation,
coexpression networkCFinderM001099HSF Transcription_Regulator(from PlantTFDB)
cellular process,
coexpression networkCFinderM001264cis-Golgi network,
Rab GDP-dissociation inhibitor activity,
C2H2 Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM001290Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
coexpression networkCFinderM001309Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
Sulfur_metabolism
serine O-acetyltransferase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
Cysteine_and_methionine_metabolism
coexpression networkCFinderM001347ubiquitin-dependent protein catabolic process,
coexpression networkCFinderM001398cis-Golgi network,
vesicle docking involved in exocytosis,
exocyst,
coexpression networkCFinderM001496Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
coexpression networkCFinderM001672STE_STE11 (from iTAK)
coexpression networkCFinderM001863Golgi apparatus,
clathrin adaptor complex,
membrane coat,
binding,
Protein_processing_in_endoplasmic_reticulum
protein transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08700.10Vps5159144

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.