CFinderM001398's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
cis-Golgi network,0.012023355GO:0005801
vesicle docking involved in exocytosis,0.019226548GO:0006904
exocyst,0.028157047GO:0000145

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000163G0940subunit of exocyst complex 8AT3G10380 (2.00E-141)
PH01000750G0190Vps51/Vps67 family (components of vesicular transport) proteinAT4G02030 (0.00E+00)
PH01000808G0540-- (-)
PH01000949G0570sec34-like family proteinAT1G73430 (0.00E+00)
PH01001552G0200-AT5G63480 (1.10E-16)
PH01004300G0070subunit of exocyst complex 8AT3G10380 (1.00E-39)
PH01004300G0100subunit of exocyst complex 8AT3G10380 (5.60E-77)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000206mitochondrial inner membrane presequence translocase complex,
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
Others Transcription_Regulator(from iTAK)
two-component response regulator activity,
Protein_processing_in_endoplasmic_reticulum
details
CFinderM000283serine-type peptidase activity,
details
CFinderM000418tRNA aminoacylation for protein translation,
details
CFinderM000716Golgi apparatus,
clathrin adaptor complex,
membrane coat,
chromatin binding,
details
CFinderM001066mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
vesicle docking,
ATP metabolic process,
ATP_catabolic_process
ATP biosynthetic process,
proton transport,
exocytosis,
details
CFinderM001099HSF Transcription_Regulator(from PlantTFDB)
cellular process,
details
CFinderM001122cis-Golgi network,
translational initiation,
RNA_transport
details
CFinderM001189GT31 GlycosylTransferases
RNA processing,
protein glycosylation,
Fructose_and_mannose_metabolism
mRNA_surveillance_pathway
Amino_sugar_and_nucleotide_sugar_metabolism
galactosyltransferase activity,
transferase activity,
details
CFinderM001264cis-Golgi network,
Rab GDP-dissociation inhibitor activity,
C2H2 Transcription_Regulator(from PlantTFDB)
details
CFinderM001290Protein_processing_in_endoplasmic_reticulum
AGC_NDR (from iTAK)
details
CFinderM001309Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
cysteine biosynthetic process from serine,
aromatic amino acid family biosynthetic process,
Sulfur_metabolism
serine O-acetyltransferase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
Cysteine_and_methionine_metabolism
details
CFinderM001347ubiquitin-dependent protein catabolic process,
details
CFinderM001376cis-Golgi network,
cell communication,
phosphatidylinositol binding,
details
CFinderM001479GT31 GlycosylTransferases
CAMK_CDPK (from iTAK)
protein glycosylation,
details
CFinderM001496Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
details
CFinderM001672STE_STE11 (from iTAK)
details
CFinderM001863Golgi apparatus,
clathrin adaptor complex,
membrane coat,
binding,
Protein_processing_in_endoplasmic_reticulum
protein transporter activity,
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples01234leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000163G0940PH01000750G0190PH01000808G0540PH01000949G0570PH01001552G0200PH01004300G0070PH01004300G0100Highcharts.com
PH01000949G0570