Annotation of co-expression genes

PH01000511G0080's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G20225 : 5.80E-51
Blast annotation: Thioredoxin superfamily protein

2.Location

Scaffold: PH01000511
Strand: +

RegionStartEnd
gene4406847907
mRNA4406847907
exon4406844611
exon4591946021
exon4643046588
exon4671046867
exon4704547907
CDS4431944611
CDS4591946021
CDS4643046588
CDS4671046867
CDS4704547135

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001495integral to Golgi membrane,
intra-Golgi vesicle-mediated transport,
cysteine metabolic process,
STE_STE11 (from iTAK)
Sulfur_relay_system
Thiamine_metabolism
cysteine desulfurase activity,
coexpression networkCFinderM001496Sulfur_relay_system
Thiamine_metabolism
COPI vesicle coat,
clathrin adaptor complex,
cysteine desulfurase activity,
cysteine metabolic process,
retrograde vesicle-mediated transport, Golgi to ER,
coexpression networkCFinderM001672STE_STE11 (from iTAK)
coexpression networkCFinderM001863Golgi apparatus,
clathrin adaptor complex,
membrane coat,
binding,
Protein_processing_in_endoplasmic_reticulum
protein transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13462.5Thioredoxin_455222

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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