PH01000112G0960's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT2G40730 : 2.10E-81
Blast annotation: Protein kinase family protein with ARM repeat domain
2.Location
Scaffold: PH01000112
Strand: -
| Region | Start | End |
| gene | 716527 | 721534 |
| mRNA | 716527 | 721534 |
| exon | 716527 | 717395 |
| exon | 717514 | 717762 |
| exon | 717943 | 718118 |
| exon | 719133 | 719206 |
| exon | 720007 | 720076 |
| exon | 720325 | 720424 |
| exon | 720524 | 720599 |
| exon | 721162 | 721236 |
| exon | 721280 | 721534 |
| CDS | 717031 | 717395 |
| CDS | 717514 | 717762 |
| CDS | 717943 | 718118 |
| CDS | 719133 | 719206 |
| CDS | 720007 | 720076 |
| CDS | 720325 | 720424 |
| CDS | 720524 | 720599 |
| CDS | 721162 | 721236 |
| CDS | 721280 | 721327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001863 | Golgi apparatus, clathrin adaptor complex, membrane coat, binding, Protein_processing_in_endoplasmic_reticulum protein transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.