PH01000142G0270's details annotation
1.Annotation
ICBR annotation: CASP, putative, expressed
Blast result AT3G18480 : 0.00E+00
Blast annotation: CCAAT-displacement protein alternatively spliced product
2.Location
Scaffold: PH01000142
Strand: -
| Region | Start | End |
| gene | 173245 | 186191 |
| mRNA | 173245 | 186191 |
| exon | 173245 | 173744 |
| exon | 174015 | 174095 |
| exon | 174763 | 174865 |
| exon | 174953 | 175054 |
| exon | 175941 | 176048 |
| exon | 179287 | 179367 |
| exon | 179619 | 179738 |
| exon | 179881 | 180009 |
| exon | 180375 | 180467 |
| exon | 180887 | 181052 |
| exon | 181267 | 181319 |
| exon | 182442 | 182536 |
| exon | 182897 | 182990 |
| exon | 183622 | 183771 |
| exon | 184388 | 184677 |
| exon | 185508 | 186191 |
| CDS | 173245 | 173744 |
| CDS | 174015 | 174095 |
| CDS | 174763 | 174865 |
| CDS | 174953 | 175054 |
| CDS | 175941 | 176048 |
| CDS | 179287 | 179367 |
| CDS | 179619 | 179738 |
| CDS | 179881 | 180009 |
| CDS | 180375 | 180467 |
| CDS | 180887 | 181052 |
| CDS | 181267 | 181319 |
| CDS | 182442 | 182536 |
| CDS | 182897 | 182990 |
| CDS | 183622 | 183771 |
| CDS | 184388 | 184677 |
| CDS | 185508 | 185547 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001495 | integral to Golgi membrane, intra-Golgi vesicle-mediated transport, cysteine metabolic process, STE_STE11 (from iTAK) Sulfur_relay_system Thiamine_metabolism cysteine desulfurase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08172.11 | CASP_C | 382 | 475 |
| PF08172.11 | CASP_C | 481 | 539 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006891 | intra-Golgi vesicle-mediated transport |
| GO:0030173 | integral to Golgi membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.