PH01000580G0660's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT5G15470 : 0
Blast annotation: galacturonosyltransferase 14
2.Location
Scaffold: PH01000580
Strand: +
| Region | Start | End |
| gene | 457974 | 466110 |
| mRNA | 457974 | 466110 |
| exon | 457974 | 458751 |
| exon | 459334 | 459401 |
| exon | 460587 | 460645 |
| exon | 460732 | 460887 |
| exon | 461639 | 461697 |
| exon | 462045 | 462150 |
| exon | 462312 | 462899 |
| exon | 463914 | 464216 |
| exon | 464662 | 466110 |
| CDS | 458480 | 458751 |
| CDS | 459334 | 459401 |
| CDS | 460587 | 460645 |
| CDS | 460732 | 460887 |
| CDS | 461639 | 461697 |
| CDS | 462045 | 462150 |
| CDS | 462312 | 462899 |
| CDS | 463914 | 464216 |
| CDS | 464662 | 464961 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001497 | COPII vesicle coat, ER to Golgi vesicle-mediated transport, Protein_processing_in_endoplasmic_reticulum signal transducer activity, ubiquitin thiolesterase activity, structural molecule activity, protein binding, transferase activity, transferring glycosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 272 | 604 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.