PH01002851G0080's details annotation
1.Annotation
ICBR annotation: dynamin family protein, putative, expressed
Blast result AT1G14830 : 0
Blast annotation: DYNAMIN-like 1C
2.Location
Scaffold: PH01002851
Strand: +
| Region | Start | End |
| gene | 55922 | 65881 |
| mRNA | 55922 | 65881 |
| exon | 55922 | 56230 |
| exon | 56334 | 56397 |
| exon | 56490 | 56594 |
| exon | 58724 | 58825 |
| exon | 59030 | 59080 |
| exon | 59178 | 59239 |
| exon | 59545 | 59635 |
| exon | 59765 | 59829 |
| exon | 59909 | 60103 |
| exon | 60194 | 60313 |
| exon | 60532 | 60602 |
| exon | 60776 | 61001 |
| exon | 61675 | 62049 |
| exon | 62680 | 62849 |
| exon | 62882 | 62977 |
| exon | 63243 | 63297 |
| exon | 63911 | 63961 |
| exon | 64080 | 64308 |
| exon | 64851 | 64990 |
| exon | 65519 | 65881 |
| CDS | 56096 | 56230 |
| CDS | 56334 | 56397 |
| CDS | 56490 | 56594 |
| CDS | 58724 | 58825 |
| CDS | 59030 | 59080 |
| CDS | 59178 | 59239 |
| CDS | 59545 | 59635 |
| CDS | 59765 | 59829 |
| CDS | 59909 | 60103 |
| CDS | 60194 | 60313 |
| CDS | 60532 | 60602 |
| CDS | 60776 | 61001 |
| CDS | 61675 | 62049 |
| CDS | 62680 | 62849 |
| CDS | 62882 | 62977 |
| CDS | 63243 | 63297 |
| CDS | 63911 | 63961 |
| CDS | 64080 | 64308 |
| CDS | 64851 | 64990 |
| CDS | 65519 | 65644 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000876 | GTPase activity, GTP binding, cellulose biosynthetic process, ubiquitin-dependent protein catabolic process, cellulose synthase (UDP-forming) activity, ubiquitin thiolesterase activity, structural molecule activity, |
| coexpression network | CFinderM001308 | microtubule associated complex, pseudouridine synthesis, RNA modification, RNA processing, microtubule-based movement, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00350.22 | Dynamin_N | 39 | 213 |
| PF01031.19 | Dynamin_M | 223 | 428 |
| PF02212.17 | GED | 747 | 839 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.