Gene details

Annotation of co-expression genes

PH01000918G0720's details annotation

1.Annotation

ICBR annotation: TruB family pseudouridylate synthase, putative, expressed

Blast result AT5G14460 : 6.00E-132
Blast annotation: Pseudouridine synthase family protein

2.Location

Scaffold: PH01000918
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001307	pseudouridine synthesis, RNA modification, protein kinase C-activating G-protein coupled receptor signaling pathway, RNA processing, pseudouridine synthase activity, NAD+ kinase activity, diacylglycerol kinase activity, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism
coexpression network	CFinderM001308	microtubule associated complex, pseudouridine synthesis, RNA modification, RNA processing, microtubule-based movement,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01509.17	TruB_N	284	434

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0001522	pseudouridine synthesis
GO:0003723	RNA binding
GO:0006396	RNA processing
GO:0009451	RNA modification
GO:0009982	pseudouridine synthase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.