Annotation of co-expression genes

PH01001599G0330's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT2G21070 : 2.00E-140
Blast annotation: methyltransferases

2.Location

Scaffold: PH01001599
Strand: -

RegionStartEnd
gene232857239550
mRNA232857239550
exon232857233269
exon234383234446
exon234571234693
exon234791234901
exon235266235355
exon235406235613
exon235700236090
exon236247236452
exon238618239550
CDS233199233269
CDS234383234446
CDS234571234693
CDS234791234901
CDS235266235355
CDS235406235613
CDS235700236090
CDS236247236452
CDS238618238850

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001307pseudouridine synthesis,
RNA modification,
protein kinase C-activating G-protein coupled receptor signaling pathway,
RNA processing,
pseudouridine synthase activity,
NAD+ kinase activity,
diacylglycerol kinase activity,
Starch_and_sucrose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
coexpression networkCFinderM001308microtubule associated complex,
pseudouridine synthesis,
RNA modification,
RNA processing,
microtubule-based movement,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05971.11Methyltransf_1015176
PF05971.11Methyltransf_10204324

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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