Annotation of co-expression genes

PH01000014G2500's details annotation

1.Annotation

ICBR annotation: homeobox and START domains containing protein, putative, expressed

Blast result AT1G73360 : 0.00E+00
Blast annotation: homeodomain GLABROUS 11

2.Location

Scaffold: PH01000014
Strand: -

RegionStartEnd
gene17809481784497
mRNA17809481784497
exon17809481781829
exon17819161782005
exon17821211782383
exon17824761782653
exon17827631782972
exon17830801783178
exon17832651783729
exon17838351784020
exon17841151784232
exon17843381784497
CDS17814491781829
CDS17819161782005
CDS17821211782383
CDS17824761782653
CDS17827631782972
CDS17830801783178
CDS17832651783729
CDS17838351784020
CDS17841151784232
CDS17843381784432

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000070HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
Rho GDP-dissociation inhibitor activity,
1-phosphatidylinositol-4-phosphate 5-kinase activity,
phosphatidylinositol metabolic process,
sequence-specific DNA binding,
transcription_regulatory_region_sequence-specific_DNA_binding
sequence-specific DNA binding transcription factor activity,
phosphatidylinositol phosphate kinase activity,
regulation of transcription, DNA-dependent,
nucleus,
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
Endocytosis
coexpression networkCFinderM000478HB-HD-ZIP Transcription_Regulator(from iTAK)
HD-ZIP Transcription_Regulator(from PlantTFDB)
AGC_RSK-2 (from iTAK)
COPII vesicle coat,
nucleus,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-HD-ZIP
Transcription_Regulator(from PlantTFDB)HD-ZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00046.28Homeobox1671
PF01852.18START212434

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000976transcription regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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