PH01000015G2210's details annotation
1.Annotation
ICBR annotation: IWS1 C-terminus family protein, putative, expressed
Blast result AT1G32130 : 9.00E-124
Blast annotation: Transcription elongation factor (TFIIS) family protein
2.Location
Scaffold: PH01000015
Strand: +
| Region | Start | End |
| gene | 1432637 | 1440348 |
| mRNA | 1432637 | 1440348 |
| exon | 1432637 | 1433657 |
| exon | 1435177 | 1435296 |
| exon | 1435928 | 1436148 |
| exon | 1436251 | 1436380 |
| exon | 1436526 | 1436588 |
| exon | 1436680 | 1436757 |
| exon | 1436854 | 1436945 |
| exon | 1437072 | 1437134 |
| exon | 1437233 | 1437383 |
| exon | 1437502 | 1437590 |
| exon | 1438190 | 1438237 |
| exon | 1439131 | 1439323 |
| exon | 1439391 | 1440348 |
| CDS | 1433331 | 1433657 |
| CDS | 1435177 | 1435296 |
| CDS | 1435928 | 1436148 |
| CDS | 1436251 | 1436380 |
| CDS | 1436526 | 1436588 |
| CDS | 1436680 | 1436757 |
| CDS | 1436854 | 1436945 |
| CDS | 1437072 | 1437134 |
| CDS | 1437233 | 1437383 |
| CDS | 1437502 | 1437590 |
| CDS | 1438190 | 1438237 |
| CDS | 1439131 | 1439323 |
| CDS | 1439391 | 1439765 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000410 | Ribosome_biogenesis_in_eukaryotes IWS1 Transcription_Regulator(from iTAK) tyrosine biosynthetic process, ribosomal_large_subunit_biogenesis ribosomal_large_subunit_export_from_nucleus small-subunit processome, cytoplasm, |
| coexpression network | CFinderM001020 | integrator_complex IWS1 Transcription_Regulator(from iTAK) snRNA_processing small GTPase regulator activity, |
| coexpression network | CFinderM001132 | IWS1 Transcription_Regulator(from iTAK) Ribosome_biogenesis_in_eukaryotes iron-sulfur cluster assembly, transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | IWS1 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08711.10 | Med26 | 272 | 317 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.