|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Ribosome_biogenesis_in_eukaryotes | 0.00251314 | KEGG | | IWS1 Transcription_Regulator(from iTAK) | 0.007474971 | GFam | | tyrosine biosynthetic process, | 0.023257358 | GO:0006571 | | ribosomal_large_subunit_biogenesis | 0.023257358 | GO:0042273 | | ribosomal_large_subunit_export_from_nucleus | 0.023257358 | GO:0000055 | | small-subunit processome, | 0.030861231 | GO:0032040 | | cytoplasm, | 0.03777042 | GO:0005737 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000015G2210 | Transcription elongation factor (TFIIS) family protein | AT1G32130 (9.00E-124) | | PH01000123G0740 | RNA helicase, ATP-dependent, SK12/DOB1 protein | AT2G06990 (0.00E+00) | | PH01000494G0920 | prephenate dehydrogenase family protein | AT1G15710 (5.00E-64) | | PH01000556G0330 | KRR1 family protein | AT3G24080 (1.20E-45) | | PH01000744G0670 | NFU domain protein 4 | AT3G20970 (1.90E-97) | | PH01001026G0340 | electron transport SCO1/SenC family protein | AT3G08950 (2.70E-48) | | PH01001091G0370 | protein serine/threonine kinases;ATP binding;catalytics | AT3G51270 (8.00E-146) | | PH01001662G0160 | pumilio 23 | AT1G72320 (1.00E-152) | | PH01002245G0060 | ARM repeat superfamily protein | AT1G13160 (2.00E-156) | | PH01002263G0240 | nuclear protein X1 | AT5G63320 (2.20E-57) | | PH01002263G0260 | global transcription factor group E8 | AT3G27260 (4.70E-28) | | PH01002747G0070 | sequence-specific DNA binding transcription factors;DNA binding;DNA binding | AT2G36740 (1.80E-93) | | PH01002847G0260 | PLC-like phosphodiesterases superfamily protein | AT1G71340 (2.20E-95) | | PH01003023G0320 | U3 ribonucleoprotein (Utp) family protein | AT4G02400 (4.00E-173) | | PH01003129G0210 | programmed cell death 2 C-terminal domain-containing protein | AT5G64830 (2.50E-37) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000889 | mRNA_surveillance_pathway
RNA_degradation
| details | | CFinderM000949 | rRNA processing,
RNA methylation,
methylation,
small-subunit processome,
methyltransferase activity,
| details | | CFinderM001020 | integrator_complex
IWS1 Transcription_Regulator(from iTAK)
snRNA_processing
small GTPase regulator activity,
| details | | CFinderM001072 | nucleus,
TLK (from iTAK)
Non-homologous_end-joining
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
Homologous_recombination
SNF2 Transcription_Regulator(from iTAK)
double-strand break repair,
histone modification,
DNA metabolic process,
transcription initiation, DNA-dependent,
| details | | CFinderM001132 | IWS1 Transcription_Regulator(from iTAK)
Ribosome_biogenesis_in_eukaryotes
iron-sulfur cluster assembly,
transcription, DNA-dependent,
| details | | CFinderM001506 | chromosome, centromeric region,
mitosis,
helicase activity,
RNA_degradation
| details | | CFinderM001577 | double-strand break repair,
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
protein_binding_involved_in_protein_folding
prephenate_dehydrogenase_activity
Non-homologous_end-joining
cullin-RING ubiquitin ligase complex,
DNA metabolic process,
bHLH Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly
chromosome, centromeric region,
U4/U6_x_U5_tri-snRNP_complex
chromosome,
DNA topological change,
mitosis,
nuclear mRNA splicing, via spliceosome,
| details |
4.Expression profilings |
