PH01002245G0060's details annotation
1.Annotation
ICBR annotation: SDA1, putative, expressed
Blast result AT1G13160 : 2.00E-156
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01002245
Strand: -
| Region | Start | End |
| gene | 19153 | 26047 |
| mRNA | 19153 | 26047 |
| exon | 19153 | 20154 |
| exon | 20321 | 20428 |
| exon | 20513 | 20644 |
| exon | 20831 | 21526 |
| exon | 21613 | 21714 |
| exon | 22363 | 22437 |
| exon | 22706 | 22801 |
| exon | 23513 | 23662 |
| exon | 23772 | 23907 |
| exon | 23999 | 24123 |
| exon | 24242 | 24418 |
| exon | 25577 | 26047 |
| CDS | 20005 | 20154 |
| CDS | 20321 | 20428 |
| CDS | 20513 | 20644 |
| CDS | 20831 | 21526 |
| CDS | 21613 | 21714 |
| CDS | 22363 | 22437 |
| CDS | 22706 | 22801 |
| CDS | 23513 | 23662 |
| CDS | 23772 | 23907 |
| CDS | 23999 | 24123 |
| CDS | 24242 | 24418 |
| CDS | 25577 | 25987 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000410 | Ribosome_biogenesis_in_eukaryotes IWS1 Transcription_Regulator(from iTAK) tyrosine biosynthetic process, ribosomal_large_subunit_biogenesis ribosomal_large_subunit_export_from_nucleus small-subunit processome, cytoplasm, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08158.11 | NUC130_3NT | 88 | 139 |
| PF05285.11 | SDA1 | 392 | 782 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000055 | ribosomal large subunit export from nucleus |
| GO:0030036 | actin cytoskeleton organization |
| GO:0042273 | ribosomal large subunit biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.