|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | spliceosomal_tri-snRNP_complex_assembly | 0.009631608 | GO:0000244 | | chromosome, centromeric region, | 0.010537649 | GO:0000775 | | U4/U6_x_U5_tri-snRNP_complex | 0.010537649 | GO:0046540 | | chromosome, | 0.021804026 | GO:0005694 | | DNA topological change, | 0.022423243 | GO:0006265 | | mitosis, | 0.022423243 | GO:0007067 | | nuclear mRNA splicing, via spliceosome, | 0.026387795 | GO:0000398 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000005G2160 | centromere/kinetochore protein, putative (ZW10) | AT2G32900 (6.00E-156) | | PH01000036G1850 | phloem protein 2-B11 | AT1G80110 (1.90E-35) | | PH01000062G1420 | tetratricopeptide repeat (TPR)-containing protein | AT3G52140 (0.00E+00) | | PH01000123G0740 | RNA helicase, ATP-dependent, SK12/DOB1 protein | AT2G06990 (0.00E+00) | | PH01000331G0820 | pre-mRNA processing ribonucleoprotein binding region-containing protein | AT1G60170 (1.00E-167) | | PH01000789G0020 | Noc2p family | AT2G18220 (0.00E+00) | | PH01000888G0540 | DNA topoisomerase 1 beta | AT5G55310 (0.00E+00) | | PH01001962G0180 | tetratricopeptide repeat (TPR)-containing protein | AT1G80410 (6.30E-36) | | PH01002105G0330 | Glutaredoxin family protein | AT1G77370 (9.30E-34) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000410 | Ribosome_biogenesis_in_eukaryotes
IWS1 Transcription_Regulator(from iTAK)
tyrosine biosynthetic process,
ribosomal_large_subunit_biogenesis
ribosomal_large_subunit_export_from_nucleus
small-subunit processome,
cytoplasm,
| details | | CFinderM000889 | mRNA_surveillance_pathway
RNA_degradation
| details | | CFinderM000931 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
signal recognition particle,
ubiquitin thiolesterase activity,
ubiquitin-dependent protein catabolic process,
chorismate metabolic process,
aromatic amino acid family biosynthetic process,
SRP-dependent cotranslational protein targeting to membrane,
chorismate mutase activity,
7S RNA binding,
Protein_export
| details | | CFinderM001133 | tRNA_(cytosine-5-)-methyltransferase_activity
RNA modification,
C3H Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001506 | chromosome, centromeric region,
mitosis,
helicase activity,
RNA_degradation
| details | | CFinderM001577 | double-strand break repair,
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
protein_binding_involved_in_protein_folding
prephenate_dehydrogenase_activity
Non-homologous_end-joining
cullin-RING ubiquitin ligase complex,
DNA metabolic process,
bHLH Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001764 | U4/U6_x_U5_tri-snRNP_complex
spliceosomal_tri-snRNP_complex_assembly
cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
cysteine-type endopeptidase inhibitor activity,
nuclear mRNA splicing, via spliceosome,
protein disulfide oxidoreductase activity,
| details |
4.Expression profilings |
