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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.003437339 | KEGG | | signal recognition particle, | 0.003744554 | GO:0048500 | | ubiquitin thiolesterase activity, | 0.004190399 | GO:0004221 | | ubiquitin-dependent protein catabolic process, | 0.006507365 | GO:0006511 | | chorismate metabolic process, | 0.006507365 | GO:0046417 | | aromatic amino acid family biosynthetic process, | 0.012996442 | GO:0009073 | | SRP-dependent cotranslational protein targeting to membrane, | 0.013634757 | GO:0006614 | | chorismate mutase activity, | 0.01988186 | GO:0004106 | | 7S RNA binding, | 0.034423142 | GO:0008312 | | Protein_export | 0.043525256 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000002G0950 | dynamin-related protein 3A | AT4G33650 (0.00E+00) | | PH01000072G0430 | ubiquitin-specific protease 13 | AT3G11910 (0.00E+00) | | PH01000084G1520 | nucleotide binding;nucleic acid binding;RNA binding | AT4G19610 (0.00E+00) | | PH01000127G0320 | signal recognition particle 19 kDa protein, putative / SRP19, putative | AT1G48160 (2.10E-31) | | PH01000767G0430 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT5G16280 (0.00E+00) | | PH01000958G0660 | ubiquitin-specific protease 12 | AT5G06600 (0) | | PH01001962G0180 | tetratricopeptide repeat (TPR)-containing protein | AT1G80410 (6.30E-36) | | PH01002860G0150 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | AT1G05380 (1.00E-111) | | PH01002880G0120 | ZCW7 | AT1G59600 (9.00E-51) | | PH01006257G0010 | chorismate mutase 2 | AT5G10870 (5.70E-77) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000572 | ubiquitin-dependent protein catabolic process,
| details | | CFinderM001009 | | details | | CFinderM001294 | small-subunit processome,
DNA integration,
ubiquitin-dependent protein catabolic process,
| details | | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly
chromosome, centromeric region,
U4/U6_x_U5_tri-snRNP_complex
chromosome,
DNA topological change,
mitosis,
nuclear mRNA splicing, via spliceosome,
| details | | CFinderM001770 | signal recognition particle,
Protein_export
membrane coat,
SRP-dependent cotranslational protein targeting to membrane,
7S RNA binding,
| details |
4.Expression profilings |
