PH01002880G0120's details annotation
1.Annotation
ICBR annotation: ZCW7, putative, expressed
Blast result AT1G59600 : 9.00E-51
Blast annotation: ZCW7
2.Location
Scaffold: PH01002880
Strand: -
| Region | Start | End |
| gene | 110266 | 114656 |
| mRNA | 110266 | 114656 |
| exon | 110266 | 110459 |
| exon | 110667 | 110840 |
| exon | 111069 | 111140 |
| exon | 111659 | 111818 |
| exon | 113148 | 114656 |
| CDS | 110307 | 110459 |
| CDS | 110667 | 110840 |
| CDS | 111069 | 111140 |
| CDS | 111659 | 111818 |
| CDS | 113148 | 113887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000572 | ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM000931 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis signal recognition particle, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, chorismate metabolic process, aromatic amino acid family biosynthetic process, SRP-dependent cotranslational protein targeting to membrane, chorismate mutase activity, 7S RNA binding, Protein_export |
| coexpression network | CFinderM001009 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.