PH01000331G0820's details annotation
1.Annotation
ICBR annotation: pre-mRNA-processing factor 31, putative, expressed
Blast result AT1G60170 : 1.00E-167
Blast annotation: pre-mRNA processing ribonucleoprotein binding region-containing protein
2.Location
Scaffold: PH01000331
Strand: -
| Region | Start | End |
| gene | 574625 | 579892 |
| mRNA | 574625 | 579892 |
| exon | 574625 | 574987 |
| exon | 575135 | 575239 |
| exon | 575526 | 575601 |
| exon | 576139 | 576241 |
| exon | 576351 | 576421 |
| exon | 576583 | 577475 |
| exon | 577990 | 578127 |
| exon | 578216 | 578278 |
| exon | 578398 | 578449 |
| exon | 579440 | 579892 |
| CDS | 574880 | 574987 |
| CDS | 575135 | 575239 |
| CDS | 575526 | 575601 |
| CDS | 576139 | 576241 |
| CDS | 576351 | 576421 |
| CDS | 576583 | 577475 |
| CDS | 577990 | 578127 |
| CDS | 578216 | 578278 |
| CDS | 578398 | 578449 |
| CDS | 579440 | 579669 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly chromosome, centromeric region, U4/U6_x_U5_tri-snRNP_complex chromosome, DNA topological change, mitosis, nuclear mRNA splicing, via spliceosome, |
| coexpression network | CFinderM001764 | U4/U6_x_U5_tri-snRNP_complex spliceosomal_tri-snRNP_complex_assembly cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, cysteine-type endopeptidase inhibitor activity, nuclear mRNA splicing, via spliceosome, protein disulfide oxidoreductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01798.17 | Nop | 196 | 424 |
| PF09785.8 | Prp31_C | 432 | 542 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U4/U6 small nuclear ribonucleoprotein PRP31 | ko03041 | K12844 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000244 | assembly of spliceosomal tri-snRNP |
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.