PH01000888G0540's details annotation
1.Annotation
ICBR annotation: DNA topoisomerase 1, putative, expressed
Blast result AT5G55310 : 0.00E+00
Blast annotation: DNA topoisomerase 1 beta
2.Location
Scaffold: PH01000888
Strand: -
| Region | Start | End |
| gene | 377743 | 385119 |
| mRNA | 377743 | 385119 |
| exon | 377743 | 378106 |
| exon | 378614 | 378782 |
| exon | 378866 | 378969 |
| exon | 379248 | 379316 |
| exon | 379694 | 379827 |
| exon | 379925 | 380015 |
| exon | 380111 | 380191 |
| exon | 380607 | 380732 |
| exon | 380813 | 380969 |
| exon | 381064 | 381158 |
| exon | 381664 | 381744 |
| exon | 381964 | 382158 |
| exon | 382305 | 385119 |
| CDS | 378038 | 378106 |
| CDS | 378614 | 378782 |
| CDS | 378866 | 378969 |
| CDS | 379248 | 379316 |
| CDS | 379694 | 379827 |
| CDS | 379925 | 380015 |
| CDS | 380111 | 380191 |
| CDS | 380607 | 380732 |
| CDS | 380813 | 380969 |
| CDS | 381064 | 381158 |
| CDS | 381664 | 381744 |
| CDS | 381964 | 382158 |
| CDS | 382305 | 383525 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly chromosome, centromeric region, U4/U6_x_U5_tri-snRNP_complex chromosome, DNA topological change, mitosis, nuclear mRNA splicing, via spliceosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02919.14 | Topoisom_I_N | 370 | 501 |
| PF02919.14 | Topoisom_I_N | 499 | 561 |
| PF01028.19 | Topoisom_I | 564 | 751 |
| PF14370.5 | Topo_C_assoc | 795 | 863 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003917 | DNA topoisomerase type I activity |
| GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity |
| GO:0005694 | chromosome |
| GO:0006265 | DNA topological change |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.