PH01000005G2160's details annotation
1.Annotation
ICBR annotation: centromere/kinetochore protein zw10, putative, expressed
Blast result AT2G32900 : 6.00E-156
Blast annotation: centromere/kinetochore protein, putative (ZW10)
2.Location
Scaffold: PH01000005
Strand: +
| Region | Start | End |
| gene | 1342922 | 1352199 |
| mRNA | 1342922 | 1352199 |
| exon | 1342922 | 1344893 |
| exon | 1344986 | 1345129 |
| exon | 1345890 | 1346063 |
| exon | 1346390 | 1346548 |
| exon | 1347368 | 1347598 |
| exon | 1347698 | 1347808 |
| exon | 1348023 | 1348115 |
| exon | 1348337 | 1348399 |
| exon | 1348945 | 1349040 |
| exon | 1349439 | 1349567 |
| exon | 1349703 | 1349780 |
| exon | 1349930 | 1350088 |
| exon | 1350161 | 1350317 |
| exon | 1350426 | 1350508 |
| exon | 1351899 | 1352199 |
| CDS | 1344357 | 1344893 |
| CDS | 1344986 | 1345129 |
| CDS | 1345890 | 1346063 |
| CDS | 1346390 | 1346548 |
| CDS | 1347368 | 1347598 |
| CDS | 1347698 | 1347808 |
| CDS | 1348023 | 1348115 |
| CDS | 1348337 | 1348399 |
| CDS | 1348945 | 1349040 |
| CDS | 1349439 | 1349567 |
| CDS | 1349703 | 1349780 |
| CDS | 1349930 | 1350088 |
| CDS | 1350161 | 1350317 |
| CDS | 1350426 | 1350508 |
| CDS | 1351899 | 1352096 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001506 | chromosome, centromeric region, mitosis, helicase activity, RNA_degradation |
| coexpression network | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly chromosome, centromeric region, U4/U6_x_U5_tri-snRNP_complex chromosome, DNA topological change, mitosis, nuclear mRNA splicing, via spliceosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06248.12 | Zw10 | 17 | 408 |
| PF06248.12 | Zw10 | 422 | 483 |
| PF06248.12 | Zw10 | 505 | 597 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000775 | chromosome, centromeric region |
| GO:0005634 | nucleus |
| GO:0007067 | mitosis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.