PH01000017G1560's details annotation
1.Annotation
ICBR annotation: major facilitator superfamily domain-containing protein 5, putative, expressed
Blast result AT1G64650 : 0.00E+00
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000017
Strand: -
| Region | Start | End |
| gene | 1046266 | 1049865 |
| mRNA | 1046266 | 1049865 |
| exon | 1046266 | 1047329 |
| exon | 1047451 | 1047666 |
| exon | 1047748 | 1048010 |
| exon | 1048099 | 1048369 |
| exon | 1049111 | 1049279 |
| exon | 1049372 | 1049516 |
| exon | 1049639 | 1049865 |
| CDS | 1047090 | 1047329 |
| CDS | 1047451 | 1047666 |
| CDS | 1047748 | 1048010 |
| CDS | 1048099 | 1048369 |
| CDS | 1049111 | 1049279 |
| CDS | 1049372 | 1049516 |
| CDS | 1049639 | 1049789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001135 | |
| coexpression network | CFinderM001136 | regulation of ARF protein signal transduction, DNA integration, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05631.13 | MFS_5 | 4 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.