PH01000018G0710's details annotation
1.Annotation
ICBR annotation: enoyl-CoA hydratase/isomerase family protein, putative, expressed
Blast result AT1G06550 : 2.00E-143
Blast annotation: ATP-dependent caseinolytic (Clp) protease/crotonase family protein
2.Location
Scaffold: PH01000018
Strand: -
| Region | Start | End |
| gene | 419302 | 423597 |
| mRNA | 419302 | 423597 |
| exon | 419302 | 419677 |
| exon | 419752 | 419858 |
| exon | 419958 | 419999 |
| exon | 420089 | 420190 |
| exon | 420232 | 420261 |
| exon | 420491 | 420589 |
| exon | 420959 | 421019 |
| exon | 421141 | 421262 |
| exon | 421441 | 421526 |
| exon | 421805 | 421889 |
| exon | 422159 | 422242 |
| exon | 422336 | 422409 |
| exon | 422534 | 422594 |
| exon | 422985 | 423053 |
| exon | 423179 | 423262 |
| exon | 423377 | 423597 |
| CDS | 419629 | 419677 |
| CDS | 419752 | 419858 |
| CDS | 419958 | 419999 |
| CDS | 420089 | 420190 |
| CDS | 420232 | 420261 |
| CDS | 420491 | 420589 |
| CDS | 420959 | 421019 |
| CDS | 421141 | 421262 |
| CDS | 421441 | 421526 |
| CDS | 421805 | 421889 |
| CDS | 422159 | 422242 |
| CDS | 422336 | 422409 |
| CDS | 422534 | 422594 |
| CDS | 422985 | 423053 |
| CDS | 423179 | 423262 |
| CDS | 423377 | 423409 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000347 | Pantothenate_and_CoA_biosynthesis Valine,_leucine_and_isoleucine_degradation CMGC_CDK-CRK7-CDK9 (from iTAK) pantothenate kinase activity, coenzyme A biosynthetic process, Propanoate_metabolism beta-Alanine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16113.4 | ECH_2 | 22 | 362 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Propanoate metabolism | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | ko00640 | K05605 |
| 296 Valine, leucine and isoleucine degradation | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | K05605 | |
| beta-Alanine metabolism | 3-hydroxyisobutyryl-CoA hydrolase [EC:3.1.2.4] | ko00410 | K05605 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.