Annotation of co-expression genes

PH01000019G1260's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000019
Strand: -

RegionStartEnd
gene894162896866
mRNA894162896866
exon894162895927
exon896480896866
CDS895546895927
CDS896480896772

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000994aminoacyl-tRNA_editing_activity
metallopeptidase activity,
coexpression networkCFinderM001543SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
histone-lysine N-methyltransferase activity,
Lysine_degradation
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity,
histone_methylation
(1->3)-beta-D-glucan biosynthetic process,
cellular protein modification process,
histone_binding
1,3-beta-D-glucan synthase complex,
nucleus,
1,3-beta-D-glucan synthase activity,
coexpression networkCFinderM001743
coexpression networkCFinderM001847peptide-methionine_(R)-S-oxide_reductase_activity
binding,
metallopeptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05633.10BPS11490
PF05633.10BPS1111199

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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