PH01000020G1730's details annotation
1.Annotation
ICBR annotation: Rad21 / Rec8 like protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 1159584 | 1166832 |
| mRNA | 1159584 | 1166832 |
| exon | 1159584 | 1160531 |
| exon | 1161283 | 1161739 |
| exon | 1161830 | 1161992 |
| exon | 1163061 | 1163125 |
| exon | 1163204 | 1163332 |
| exon | 1163441 | 1163578 |
| exon | 1163685 | 1163941 |
| exon | 1164031 | 1164220 |
| exon | 1164934 | 1165070 |
| exon | 1165155 | 1165567 |
| exon | 1165661 | 1165694 |
| exon | 1165789 | 1165813 |
| exon | 1165898 | 1166030 |
| exon | 1166415 | 1166832 |
| CDS | 1160297 | 1160531 |
| CDS | 1161283 | 1161739 |
| CDS | 1161830 | 1161992 |
| CDS | 1163061 | 1163125 |
| CDS | 1163204 | 1163332 |
| CDS | 1163441 | 1163578 |
| CDS | 1163685 | 1163941 |
| CDS | 1164031 | 1164220 |
| CDS | 1164934 | 1165070 |
| CDS | 1165155 | 1165567 |
| CDS | 1165661 | 1165694 |
| CDS | 1165789 | 1165813 |
| CDS | 1165898 | 1166030 |
| CDS | 1166415 | 1166525 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000568 | nuclear chromosome, Mismatch_repair Mismatch_repair mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04825.12 | Rad21_Rec8_N | 1 | 126 |
| PF04824.15 | Rad21_Rec8 | 769 | 818 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000228 | nuclear chromosome |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.