Gene details

Annotation of co-expression genes

PH01000020G2590's details annotation

1.Annotation

ICBR annotation: DNA-directed RNA polymerase III subunit RPC1, putative, expressed

Blast result AT5G60040 : 1.30E-53
Blast annotation: nuclear RNA polymerase C1

2.Location

Scaffold: PH01000020
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001129	nucleus, double-strand break repair, DNA metabolic process, RNA_polymerase Pyrimidine_metabolism Purine_metabolism

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Purine metabolism	DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]	ko00230	K03018
Pyrimidine metabolism	DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]	ko00240	K03018
RNA polymerase	DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]	ko03020	K03018

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0005634	nucleus
GO:0006351	transcription, DNA-dependent
GO:0008270	zinc ion binding
GO:0032549	ribonucleoside binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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