PH01000025G0840's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G50380 : 8.00E-141
Blast annotation: Protein of unknown function (DUF1162)
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 611329 | 625155 |
| mRNA | 611329 | 625155 |
| exon | 611329 | 612054 |
| exon | 613668 | 613723 |
| exon | 613815 | 613905 |
| exon | 615153 | 615572 |
| exon | 615681 | 615958 |
| exon | 616102 | 616187 |
| exon | 616255 | 616341 |
| exon | 617006 | 617267 |
| exon | 617354 | 617763 |
| exon | 617880 | 617923 |
| exon | 619012 | 619328 |
| exon | 619432 | 619542 |
| exon | 620190 | 620279 |
| exon | 620408 | 620514 |
| exon | 620639 | 620787 |
| exon | 621156 | 621238 |
| exon | 621309 | 621404 |
| exon | 621539 | 621661 |
| exon | 621780 | 621863 |
| exon | 622008 | 622148 |
| exon | 622284 | 625155 |
| CDS | 611865 | 612054 |
| CDS | 613668 | 613723 |
| CDS | 613815 | 613905 |
| CDS | 615153 | 615572 |
| CDS | 615681 | 615958 |
| CDS | 616102 | 616187 |
| CDS | 616255 | 616341 |
| CDS | 617006 | 617267 |
| CDS | 617354 | 617763 |
| CDS | 617880 | 617923 |
| CDS | 619012 | 619328 |
| CDS | 619432 | 619542 |
| CDS | 620190 | 620279 |
| CDS | 620408 | 620514 |
| CDS | 620639 | 620787 |
| CDS | 621156 | 621238 |
| CDS | 621309 | 621404 |
| CDS | 621539 | 621661 |
| CDS | 621780 | 621863 |
| CDS | 622008 | 622148 |
| CDS | 622284 | 622619 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001447 | superoxide metabolic process, superoxide dismutase activity, Peroxisome |
| coexpression network | CFinderM001513 | Glycine,_serine_and_threonine_metabolism GH17 Glycoside_Hydrolases L-serine biosynthetic process, phosphoglycerate dehydrogenase activity, Methane_metabolism cofactor binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06650.11 | SHR-BD | 345 | 628 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.