PH01000025G1080's details annotation
1.Annotation
ICBR annotation: LIM domain-containing protein, putative, expressed
Blast result AT1G19270 : 3.00E-155
Blast annotation: DA1
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 802197 | 809943 |
| mRNA | 802197 | 809943 |
| exon | 802197 | 804192 |
| exon | 804254 | 804300 |
| exon | 805989 | 806079 |
| exon | 806265 | 806445 |
| exon | 806632 | 806752 |
| exon | 806831 | 806914 |
| exon | 807017 | 807136 |
| exon | 807572 | 807784 |
| exon | 807871 | 807930 |
| exon | 808026 | 808144 |
| exon | 808284 | 808342 |
| exon | 808458 | 809943 |
| CDS | 803754 | 804192 |
| CDS | 804254 | 804300 |
| CDS | 805989 | 806079 |
| CDS | 806265 | 806445 |
| CDS | 806632 | 806752 |
| CDS | 806831 | 806914 |
| CDS | 807017 | 807136 |
| CDS | 807572 | 807784 |
| CDS | 807871 | 807930 |
| CDS | 808026 | 808144 |
| CDS | 808284 | 808342 |
| CDS | 808458 | 808786 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
| coexpression network | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00412.21 | LIM | 255 | 309 |
| PF12315.7 | DA1-like | 404 | 615 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.