PH01000028G1230's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT1G13250 : 2.00E-117
Blast annotation: galacturonosyltransferase-like 3
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 817250 | 820267 |
| mRNA | 817250 | 820267 |
| exon | 817250 | 820267 |
| CDS | 819215 | 820243 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000324 | pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process GT8 GlycosylTransferases pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT8 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 45 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.