PH01000029G2300's details annotation
1.Annotation
ICBR annotation: LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
Blast result AT3G43720 : 1.10E-23
Blast annotation: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
2.Location
Scaffold: PH01000029
Strand: +
| Region | Start | End |
| gene | 1538751 | 1541044 |
| mRNA | 1538751 | 1541044 |
| exon | 1538751 | 1539290 |
| exon | 1540254 | 1540340 |
| exon | 1540786 | 1541044 |
| CDS | 1538921 | 1539290 |
| CDS | 1540254 | 1540340 |
| CDS | 1540786 | 1540907 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000070 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Rho GDP-dissociation inhibitor activity, 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol metabolic process, sequence-specific DNA binding, transcription_regulatory_region_sequence-specific_DNA_binding sequence-specific DNA binding transcription factor activity, phosphatidylinositol phosphate kinase activity, regulation of transcription, DNA-dependent, nucleus, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Endocytosis |
| coexpression network | CFinderM000478 | HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) COPII vesicle coat, nucleus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14368.5 | LTP_2 | 25 | 122 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.