PH01000033G1580's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT3G45620 : 2.00E-147
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000033
Strand: -
| Region | Start | End |
| gene | 999407 | 1002910 |
| mRNA | 999407 | 1002910 |
| exon | 999407 | 999906 |
| exon | 1000002 | 1000679 |
| exon | 1000762 | 1000905 |
| exon | 1001703 | 1001954 |
| exon | 1002656 | 1002910 |
| CDS | 999661 | 999906 |
| CDS | 1000002 | 1000679 |
| CDS | 1000762 | 1000905 |
| CDS | 1001703 | 1001954 |
| CDS | 1002656 | 1002775 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000273 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity lysine biosynthetic process via diaminopimelate, RLK-Pelle_LRR-Xb-1 (from iTAK) MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000486 | |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM000823 | ABC_transporters |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 50 | 84 |
| PF00400.31 | WD40 | 304 | 340 |
| PF00400.31 | WD40 | 352 | 382 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.