Annotation of co-expression genes

PH01000034G0840's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT2G22125 : 0.00E+00
Blast annotation: binding

2.Location

Scaffold: PH01000034
Strand: -

RegionStartEnd
gene595262609792
mRNA595262609792
exon595262595666
exon595759595875
exon596695597149
exon597493598162
exon598241600031
exon601136604184
exon605847605914
exon608142609792
CDS595526595666
CDS595759595875
CDS596695597149
CDS597493598162
CDS598241600031
CDS601136604184
CDS605847605914
CDS608142608207

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000850RLK-Pelle_DLSV (from iTAK)
coexpression networkCFinderM001296CMGC_DYRK-PRP4 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
recognition of pollen,
protein phosphorylation,
coexpression networkCFinderM001327
coexpression networkCFinderM001328GT32 GlycosylTransferases
Golgi stack,
CMGC_SRPK (from iTAK)
coexpression networkCFinderM001526protein catabolic process,
coexpression networkCFinderM001704RLK-Pelle_DLSV (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00514.22Arm521560
PF00168.29C219972088

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.