Annotation of co-expression genes

PH01000035G1650's details annotation

1.Annotation

ICBR annotation: RNA-dependent RNA polymerase, putative, expressed

Blast result AT4G11130 : 0.00E+00
Blast annotation: RNA-dependent RNA polymerase 2

2.Location

Scaffold: PH01000035
Strand: -

RegionStartEnd
gene11843531192671
mRNA11843531192671
exon11843531185399
exon11854671185514
exon11859221186003
exon11863061188203
exon11898261190268
exon11908271191106
exon11912481191439
exon11914691191732
exon11920471192671
CDS11846051185399
CDS11854671185514
CDS11859221186003
CDS11863061188203
CDS11898261190268
CDS11908271191106
CDS11912481191439
CDS11914691191732
CDS11920471192172

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000787TKL-Pl-3 (from iTAK)
RLK-Pelle_LRR-II (from iTAK)
RNA-directed RNA polymerase activity,
protein phosphorylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR84109
PF01535.19PPR220246
PF01535.19PPR250276
PF05183.11RdRP6331204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003968RNA-directed RNA polymerase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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