Annotation of co-expression genes

PH01000036G0470's details annotation

1.Annotation

ICBR annotation: methyltransferase, putative, expressed

Blast result AT5G57280 : 2.00E-111
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.Location

Scaffold: PH01000036
Strand: +

RegionStartEnd
gene332337336966
mRNA332337336966
exon332337333084
exon333169333244
exon333399333482
exon333574333629
exon334868334924
exon334999335048
exon335132335284
exon335379335520
exon336435336966
CDS332989333084
CDS333169333244
CDS333399333482
CDS333574333629
CDS334868334924
CDS334999335048
CDS335132335284
CDS335379335520
CDS336435336599

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001258proteasome complex,
regulation of protein catabolic process,
enzyme regulator activity,
Proteasome
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08241.11Methyltransf_1155157
PF12589.7WBS_methylT201289

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.